2003-2004 | 2005 | 2006

Selected publications from the MBL/WHOI/Brown NAI Lead Team, 2005

Baross, J.A., Huber, J.A., Mehta, M.P., Opatkiewicz, A., Bolton, S.A., Butterfield, D.A., Sogin, M.L. & Embley, R.W. (2005). Phylogenetic and Physiological Diversity of Subseafloor Microbial Communities at Axial Seamount, Juan de Fuca Ridge: Summary of Results From the New Millenium Observatory (NeMO), 1998-2004 [Abstract]. Eos, Trans. AGU, 85: Fall Meet. Suppl., V51C-1500. San Francisco.

Bibring, J.P., Langevin, Y., Gendrin, A., Gondet, B., Poulet, F., Berthe, M., Soufflot, A., Arvidson, R., Mangold, N., Mustard, J. & Drossart, P. (2005). Mars surface diversity as revealed by the OMEGA/Mars Express observations. Science, 307(5715):1576-81

Bordenstein, S. & Rosengaus, R.B. (2005). Discovery of a novel Wolbachia super group in Isoptera. Curr Microbiol, 51(6):393-8

Bordenstein, S.R. & Reznikoff, W.S. (2005). Mobile DNA in obligate intracellular bacteria. Nat Rev Microbiol, 3(9):688-99

Casiraghi, M., Bordenstein, S.R., Baldo, L., Lo, N., Beninati, T., Wernegreen, J.J., Werren, J.H. & Bandi, C. (2005). hylogeny of Wolbachia pipientis based on gltA, groEL and ftsZ gene sequences: clustering of arthropod and nematode symbionts in the F supergroup, and evidence for further diversity in the Wolbachia tree. Microbiology, 151(Pt 12):4015-22

Degnan, P.H., Lazarus, A.B. & Wernegreen, J.J. (2005). Genome sequence of Blochmannia pennsylvanicus indicates parallel evolutionary trends among bacterial mutualists of insects. Genome Res, 15(8):1023-33

Dhillon, A., Lever, M., Lloyd, K.G., Albert, D.B., Sogin, M.L. & Teske, A. (2005). ethanogen diversity evidenced by molecular characterization of methyl coenzyme M reductase A (mcrA) genes in hydrothermal sediments of the Guaymas Basin. Applied Environ Microbiol, 71(8):4592-601

Edwards, K.J. (2005). Neutrophilic, autotrophic Fe-oxidizing bacteria and rock weathering, carbon cycling in the deep-sea. Abstracts of papers of the american chemical society :227 I1213.

Edwards, K.J., Bach, W. & McCollom, T.M. (2005). Geomicrobiology in oceanography: Mineral-microbe interactions at and below the seafloor. Trends in Microbiology, 13:449-456.

Fassett, C.I. & Head, J.W. (2005). Fluvial sedimentary deposits on Mars: Ancient deltas in a crater lake in the Nili Fossae region. Geophysical Research Letters 32:doi:10.1029/2005GL023456.

Fisher, A.T., Urabe, T., Klaus, A., Wheat, C.G., Becker, K., Davis, E.E., Jannasch, H., Hulme, S., Nielsen, M., Schroeder, D., Dixon, R., Pettigrew, T.L., Macdonald, R., Meldrum, R., Fisk, M., Cowen, J., Bach, W. & Edwards, K.J. (2005). IODP Expedition 301 installs three borehole crustal observatories, prepares for three-dimensional, cross-hole experiments in the northeastern Pacific Ocean. Scientific Drilling, 1:6-11.

Fisher, A.T., Wheat, C.G., Becker, K., Davis, E., Jannasch, H., Schroeder, D., Dixon, R., Pettigrew, T.L., Meldrum, R., Macdonald, R., Nielsen, M., Fisk, M., Cowen, J., Bach, W. & Edwards, K.J. (2005). Scientific and technical design and deployment of long-term, subseafloor observatories for hydrological and related experiments, IODP Expedition 301, Eastern Flank of Juan de Fuca Ridge. In: A.T. Fisher, T. Urabe & A. Klaus (Eds.). Proc. IODP, Expedition 301. College Station, TX: IODP.

Fry, A.J. & Wernegreen, J.J. (2005). The roles of positive and negative selection in the molecular evolution of insect endosymbionts. Gene, 355:1-10

Gendrin, A., Mangold, N., Bibring, J.P., Langevin, Y., Gondet, B., Poulet, F., Bonello, G., Quantin, C., Mustard, J., Arvidson, R. & LeMouelic, S. (2005). Sulfates in Martian layered terrains: the OMEGA/Mars Express view. Science, 307(5715):1587-91

Huang, J., Xu, Y. & Gogarten, J.P. (2005). The presence of a haloarchaeal type tyrosyl-tRNA synthetase marks the opisthokonts as monophyletic. Mol Biol Evol, 22(11):2142-6

Huber, J.A. & Sogin, M.L. (2005). Describing the anaerobic thermophilic subseafloor population: A metagenomic strategy [Abstract]. Thermophiles 2005. Gold Coast, Australia.

Hugler, M., Wirsen, C.O., Fuchs, G., Taylor, C.D. & Sievert, S.M.: Evidence for autotrophic CO2 fixation via the reductive tricarboxylic acid cycle in members of the epsilon-Proteobacteria. Journal of Bacteriology 187:3020-3027 (2005)

Kappler, A., Emerson, D., Edwards, K.J., Amend, J.P., Gralnick, J.P., Grathwohl, P., Hoehler, T. & Straub, K.L. (2005). Microbial activity in biogeochemical gradients - new aspects of research. Geobiology Journal, 3:229-233.

Kysela, D.L., Palacios, C. & Sogin, M.L.: Serial Analysis of V6 ribosomal sequence tags (SARST-V6): A method for efficient, high-throughput analysis of microbial community composition. Environmental Microbiology 7(3): 356-364 (2005)

Lee, W.J., Simpson, A.G.B. & Patterson, D.J. (2005). Free-living heterotrophic flagellates from freshwater sites in Tasmania (Australia), a field survey. Acta Protozoologica, 44:321-350.

Levy, J. & Head, J.W. (2005). Evidence for remnants of ancient ice-rich deposits: Mangala Valles Outflow Channel, Mars. Terra Nova: doi: 10.1111/j.1365-3121.

Lloyd, K.G., Edgcomb, V.P., Molyneaux, S.J., Boer, S., Wirsen, C.O., Atkins, M.S. & Teske, A. (2005). Effects of dissolved sulfide, pH, and temperature on growth and survival of marine hyperthermophilic Archaea. Appl Environ Microbiol, 71(10):6383-7

Mehta, M.P., Huber, J.A. & Baross, J.A. (2005). Incidence of novel and potentially archaeal nitrogenase genes in the deep Northeast Pacific Ocean. Environ Microbiol, 7(10):1525-34

Murray, S., Flo Jorgensen, M., Ho, S.Y., Patterson, D.J. & Jermiin, L.S. (2005). Improving the analysis of dinoflagellate phylogeny based on rDNA. Protist, 156(3):269-86.

Mustard, J.F., Poulet, F., Gendrin, A., Bibring, J.P., Langevin, Y., Gondet, B., Mangold, N., Bellucci, G. & Altieri, F. (2005). Olivine and pyroxene diversity in the crust of Mars. Science, 07(5715):1594-7.

Polaszek, A., Agosti, D., Alonso-Zarazaga, M., Beccaloni, G., de Place Bjørn, P., Bouchet, P., Brothers, D.J., Evenhuis, N., Godfray, H.C.J., Johnson, N.F., Krell, F.-T., Lipscomb, D., Lyal, C.H.C., Mace, G.M., Mawatari, S., Miller, S.E., Minelli, A., Morris, S., Ng, P.K.L., Patterson, D.J., Pyle, R.L., Robinson, N., Rogo, L., Taverne, J., Thompson, F.C., van Tol, J., Wheeler, Q.D. & Wilson, E.O. (2005). A universal register for animal names. Nature, 437(7058):477.

Poulet, F., Bibring, J.P., Mustard, J.F., Gendrin, A., Mangold, N., Langevin, Y., Arvidson, R.E., Gondet, B., Gomez, C., Berthe, M., Erard, S., Forni, O., Manaud, N., Poulleau, G., Soufflot, A., Combes, M., Drossart, P., Encrenaz, T., Fouchet, T., Melchiorri, R., Bellucci, G., Altieri, F., Formisano, V., Fonti, S., Capaccioni, F., Cerroni, P., Coradini, A., Korablev, O., Kottsov, V., Ignatiev, N., Titov, D., Zasova, L., Pinet, P., Schmitt, B., Sotin, C., Hauber, E., Hoffmann, H., Jaumann, R., Keller, U. & Forget, F. (2005). Phyllosilicates on Mars and implications for early martian climate. Nature, 438(7068):623-7.

Roland, S., Bahr, M., Olendzenski, L. & Patterson, D.J. (2005). Switch on micro*scope. The Science Teacher: 47-49.

Rouxel, O.J., Bekker, A. & Edwards, K.J. (2005). Response to Comment on "Iron isotope constraints on the Archean and Paleoproterozoic ocean redox state. Science, 311:177.

Schaber, J., Rispe, C., Wernegreen, J., Buness, A., Delmotte, F., Silva, F.J. & Moya, A.: Gene expression levels influence amino acid usage and evolutionary rates in endosymbiotic bacteria. Gene 352:109-117 (2005)

Sheehan, K.B., Patterson, D.J., Dicks, B.L. & Henson, J.B. (2005). Seen and Unseen, discovering the microbes of Yellowstone. Nashville, TN. Falcon Press.

Sorensen, K.B., Canfield, D.E., Teske, A.P. & Oren, A. (2005). Community composition of a hypersaline endoevaporitic microbial mat. Appl Environ Microbiol, 71(11):7352-65.

Teske, A.P. (2005). The deep subsurface biosphere is alive and well. Trends Microbiol, 13(9):402-4.

Toner, B. (2005). Low-temperature weathering of hydrothermal sulfide minerals at Juan de Fuca Ridge. American Geophysical Union. SanFrancisco, CA.

Wernegreen, J.J. (2005). For better or worse: genomic consequences of intracellular mutualism and parasitism. Curr Opin Genet Dev, 15(6):572-83.